rs50431581 SNP Detail

Summary

• ID
  rs50431581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76846326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGGCAG CTGTCACCCT
  GCTCTGGGCA TTGTAGATGA ACCTGTGCTT CCCTTCGATT GTGGAGGTCA AAGGACAGAG
  GGACTGTTTG GATCCTTTAC TGTGTCTAAT TACTCTTAGC ACTGCCCGCA TTGTGTGGGT
  CAGTACATCA TCTCTGTTCA TAGTTGTATA GCATTTCAGT GTCTGAGTGA GCCCAGCCTA
  Y
  GTGTTTATTT ACTTGGGGAG AGTTGGGGGT CTAGACTTTC ACATCATAAC GCCAATCAGA
  TCTTAACTCT TGCTTCTGTC GAGAAAACAG GAAAGCAATG GCTGGCCCAC AGAAGAGGTT
  CATCTTTATT TTATTTTCTG TATATGGGTG TTTTGTCTGC ACATATATCT GTGTGCCACA
  TGTGTGAAGA GCCCAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376429	NES15271981	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50431581					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376429	NES15271981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76846326 () rs orientation: forward

Symbol	Name	Function Class
Gm3137	predicted gene, 3137	1009 bp downstream
Gm10787	predicted gene 10787	1503 bp upstream
Gm35721	predicted gene, 35721	1869 bp upstream
Rr384954	regulatory region 384954	1948 bp downstream
Rr434364	regulatory region 434364	1598 bp distal
Rr434365	regulatory region 434365	1807 bp proximal
Tssr94202	transcription start site region 94202	1492 bp upstream