rs50431584 SNP Detail

Summary

• ID
  rs50431584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:136560741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACATTG ATAGGTAGAT
  AGATGCTAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGACAGATA
  GACAGATAGA CAGATAGACA GATGATAGAT AGACAGACAG GATTGGACCC AGAGCATTAA
  GCATGCTAAG CAAGCACTCA TCCCCTAAAC TATACTGCAG GCCTCTGCAC GTGATTTTTT
  Y
  CCCCATCTTT CCCTCCTGGT TTGAGAATCG AGGCATGCTC ACAGCTCTCC TGAAGCAACT
  GCTTATAATT TCCTGTTTTC AGAATCAGTC TCCTAATAAC CCACCAGGGC ACTGTAAAAC
  TTGGTCTCCT CATCCACAGA CAGTGTTGGT CAGTATTGCT GCTATTCTGA CGCAGCTGAA
  AGGCCTCAGC GACGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147649442	ENSMUSSNP4957962	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50431584					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136560741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr565864	regulatory region 565864			1494 bp proximal
Rr565865	regulatory region 565865			1605 bp proximal
Snap25	synaptosomal-associated protein 25			Intron
				Noncoding-Transcript-Variant