rs50432163 SNP Detail

Summary

• ID
  rs50432163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:72272607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAATGCAG CAGCAAATAT CACCTACTAA TGTTACTGCT
  CCTGAACTGC TCTTCAACAT GTTCCTACTT AGCTGTTATG GGTGGCTAAT GTTACAGCTT
  Y
  TTAAACCCAG GATGCCAGGA GCCTTGGCTC TTTAAGGATT GAGGGCATCT CAGAACTCTT
  AGTCACATTG TCTCCTATCC ACTCTACTCT TCTGCTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60234431	NES15740427	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T		C	C	T	C		T
ss148330608	ENSMUSSNP1708152	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325244230	CHEV_16_72475964	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50432163					SNP	T	T	T	T	T	T	C	T	C	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60234431	NES15740427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:72272607 () rs orientation: forward

Symbol	Name	Function Class
D16Mit27	DNA segment, Chr 16, Massachusetts Institute of Technology 27	1772 bp proximal
Robo1	roundabout guidance receptor 1	within coordinates