rs50435019 SNP Detail

Summary

• ID
  rs50435019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30323436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAGTTAA GCCCTGCCCA
  TCTGTGCCTT TCAGACGGAA ACACAGAAAC CTAGGCTGTG CCATTTGTCT TCTCACAGTT
  GTTTAATGAA ACCTCAAGGA ATATGGAAAT AAAGGCTAGA CCCTGGAGTG GTGAAAGAGT
  AGGGCCCTGG GTGTTGGCTG ATTCTTTCTG TGAAAGGCCA TGAGGACCAA GGATGTGTCT
  Y
  TAAAGCAGGG AAGGACTCTA GAATGGTATG TGTAGATACA CAAGGGGGCA GTCTTCACTG
  TGGCCTGTAA AACCCTATCC TCTCGCAATA ATCTTTTTCT TGACACAGGG TTCCTTGAAC
  TCACAGAAAT CCACCTGCCA CCACTAGGCT GCTCGAGTAA TTTTTATCAG AGCCCACATC
  TGTGTGCTTG CAGGGAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61133394	NES16636979	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50435019					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61133394	NES16636979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30323436 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Garem2	GRB2 associated regulator of MAPK1 subtype 2	58 bp downstream
Hadha	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	985 bp downstream
Rr112564	regulatory region 112564	within coordinates
Rr128721	regulatory region 128721	1565 bp proximal
Tssr50477	transcription start site region 50477	1356 bp downstream
Tssr50478	transcription start site region 50478	1787 bp downstream