rs50435186 SNP Detail

Summary

• ID
  rs50435186
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59091306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC TGAAAGCTGT CAGTTAAAAA
  T
  TGGCCTTTTG GGCTGGAGAG ATGGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132229220	ENSMUSSNP7093820	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323697498	CHEV_11_59013982	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50435186					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59091306 () rs orientation: forward

Symbol	Name	Function Class
2610507I01Rik	RIKEN cDNA 2610507I01 gene	within coordinates
Cpgi2954	CpG island 2954	1546 bp proximal
Rr402602	regulatory region 402602	1889 bp upstream
Rr448112	regulatory region 448112	1106 bp proximal
Rr448113	regulatory region 448113	1957 bp proximal
Tssr101787	transcription start site region 101787	2000 bp upstream
Tssr108206	transcription start site region 108206	1202 bp downstream
Tssr108207	transcription start site region 108207	1232 bp downstream
Tssr108208	transcription start site region 108208	1661 bp downstream
Tssr108209	transcription start site region 108209	1689 bp downstream
Tssr108210	transcription start site region 108210	1896 bp downstream