rs50435552 SNP Detail

Summary

• ID
  rs50435552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69342429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA CAATAATCAC GAGGCAGTAA
  R
  ATGTGTCCAA GTGCAGCTCA TCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss137856828	ENSMUSSNP2844446	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324083687	CHEV_12_70396642	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50435552					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69342429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	763 bp proximal
Klhdc2	kelch domain containing 2	1026 bp upstream
Rr467019	regulatory region 467019	1063 bp distal
Rr467020	regulatory region 467020	577 bp proximal
Rr467021	regulatory region 467021	1078 bp proximal
Tssr113629	transcription start site region 113629	327 bp upstream
Tssr113630	transcription start site region 113630	1021 bp upstream
Tssr113631	transcription start site region 113631	1176 bp upstream
Tssr113632	transcription start site region 113632	1273 bp upstream
Tssr113633	transcription start site region 113633	1283 bp upstream
Tssr113634	transcription start site region 113634	1309 bp upstream
Tssr113635	transcription start site region 113635	1317 bp upstream
Tssr113636	transcription start site region 113636	1744 bp upstream
Tssr116496	transcription start site region 116496	1579 bp downstream