rs50435853 SNP Detail

Summary

• ID
  rs50435853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78958485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTTACA ACCTAGATGG
  AAACTATTCA GGAAAAAAGA AAATGTAAAA ACCCGAGCGA TTCTGAAGGT GAGCTGGCTG
  GCCCCCTGGA GCCTGGAAAT TCCCTAACTG CCCCAAACCA TCCCCAGGCC GAGACTCTTA
  ATCCCAACTG AAGATCAGTC CTCTGAGAAG GACTGAGAAA AAGCACTGCA GGGAACCGCT
  R
  CGCCAGGGTC TGTGTCCTGC CCCGATGCTG AGAAGAGTTT GGGGCAGCCA GCAGCAACCC
  GTACTGCTCG TACTGCTCGG CCTTTCAGCC TGAGGCTGGA AGGCAAAAGT CCTGAGGACG
  CCCCTTTACA CACCCAGCCC CACCCTCGGG AGAGGCTGCC TGTTGCTAGG TGGAGCAGTT
  TGCTAGGGAA ATTAAAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61654151	NES17605661	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		G	A		G
ss324107226	CHEV_12_80012698	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50435853					SNP	A	A	A	A	A	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654151	NES17605661	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78958485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4797	CpG island 4797	242 bp proximal
Gm46359	predicted gene, 46359	within coordinates
Gm56547	predicted gene, 56547	within coordinates
Rr387474	regulatory region 387474	within coordinates
Tssr114072	transcription start site region 114072	219 bp upstream