rs50436129 SNP Detail

Summary

• ID
  rs50436129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160943584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTATGAC CTAGAAATGG GGGTGTGAGC
  CTGGTAGATA AACAGTAGTT TAAATAACTG GCGAATAATT AGAATTTCAC AATCATTATA
  TTGTGAACAC ACAATGAGAA TCTGTCTATC AATTATACAA TACACAAAGC TTTTTGCTGT
  R
  AACTGAAGAA AATTCAAATA TGCATCAAGA AAGCAACTGA AGAACAACTA TTTAGAGTGG
  ATATGCATGA ATAACCAGGA AGAGGGCAAC Aagctggggt tggtaggtgt gtgctgtgtt
  ccagcactta gaaggctgag tagcaaactg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145906466	ENSMUSSNP6149392	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320080359	CHEV_1_163046145	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50436129					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160943584 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klhl20	kelch-like 20			Intron
				Noncoding-Transcript-Variant
Rr421756	regulatory region 421756			1150 bp distal