rs50436468 SNP Detail

Summary

• ID
  rs50436468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24793301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT CTGCCCCATC TACTACAAAG
  Y
  GCCGTTTAAG AATACAAAGA GAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146998940	ENSMUSSNP5134887	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323275278	CHEV_10_24637209	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50436468					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24793301 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	1766 bp downstream
Tssr92747	transcription start site region 92747	1676 bp downstream
Tssr97085	transcription start site region 97085	1910 bp upstream
Tssr97086	transcription start site region 97086	1848 bp upstream
Tssr97087	transcription start site region 97087	1822 bp upstream
Tssr97088	transcription start site region 97088	1762 bp upstream
Tssr97089	transcription start site region 97089	1747 bp upstream
Tssr97090	transcription start site region 97090	1716 bp upstream
Tssr97091	transcription start site region 97091	1321 bp upstream
Tssr97092	transcription start site region 97092	1302 bp upstream
Tssr97093	transcription start site region 97093	1275 bp upstream
Tssr97094	transcription start site region 97094	1264 bp upstream
Tssr97095	transcription start site region 97095	1247 bp upstream
Tssr97096	transcription start site region 97096	962 bp upstream
Tssr97097	transcription start site region 97097	715 bp upstream
Tssr97098	transcription start site region 97098	556 bp upstream
Tssr97099	transcription start site region 97099	544 bp downstream
Tssr97100	transcription start site region 97100	582 bp downstream