rs50436866 SNP Detail

Summary

• ID
  rs50436866
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90626547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCTTAGTT TACCCAACAT AAGACGTTCA TATTAAACTT
  ATATCCCATG ATTATTGAGG CTGTGTTTTT AAAAAAGATT GTGTGTGTGT GGGGGGGGGG
  S
  CAGAGTAGAG TTCGAGTTCG TGGGTCCCCT GAGAGAGATT CAGGGTGGTT GCAAGCTGCC
  AGCGCTGGGT GCTGGAATCT GAACTAGTGT CCTCTGGAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148543099	ENSMUSSNP5879434	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50436866					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90626547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	210 bp proximal
Eva1c	eva-1 homolog C	within coordinates
Rr519212	regulatory region 519212	1764 bp distal
Rr519213	regulatory region 519213	710 bp proximal
Tssr139312	transcription start site region 139312	422 bp upstream
Tssr139313	transcription start site region 139313	457 bp upstream
Tssr139314	transcription start site region 139314	746 bp upstream
Tssr139315	transcription start site region 139315	1171 bp upstream
Tssr139316	transcription start site region 139316	1470 bp upstream
Tssr139317	transcription start site region 139317	1556 bp upstream