rs50436915 SNP Detail

Summary

• ID
  rs50436915
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTGCTG AGATGACAGG
  CATGAACCAC CCGGCCAGCT GCACCTGCAG TAGACTCCAT ATGACATACA TTTATTCTGG
  GAAATACTTG TTGAAACCTA TGACGAGCAG AGTTTGGTTG AATGGTACAG AGGGCAGGTA
  GGAGGGGGAG CATGGCAGGC AGCAGGCAGC CAGCACCTGC CTGGGTGCCT CACAGGCCTG
  M
  TTGTAAATTT GACTGATTTA GTTTTTGTAG CCCAGGATGG CCTGGAATTA ACTCATAGAG
  ATCCATCTGC CTTTGCTTCT TGTGTGTCAT CGTGGCTCAC CTCACTGGAA ATTCCTGCTG
  TCACAAATAG TGAGAAACCA CTTCTCTGGG CTTCATTTTC TTTACAGGCA AAAGGGAACG
  GGTATGGGTG AACTTATTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431858	NES15936364	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	A		C	A	A
ss135571338	ENSMUSSNP547005	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					C		A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50436915					SNP	C	C	C	C	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431858	NES15936364	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	490 bp proximal
Gm66976	predicted gene, 66976	255 bp downstream
Rhoc	ras homolog family member C	980 bp upstream
Rr77009	regulatory region 77009	230 bp proximal
Tssr31056	transcription start site region 31056	518 bp upstream
Tssr31057	transcription start site region 31057	739 bp upstream
Tssr31058	transcription start site region 31058	788 bp upstream
Tssr31059	transcription start site region 31059	972 bp upstream