rs50437248 SNP Detail

Summary

• ID
  rs50437248
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74791950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAATCACA CCCGGTAGAG
  CCCATGTTGC AAGTGATGGG GCCCTATCCC TGCTGCCTTA GTTAGGGTTA CTTTCCCTGT
  GAGAAAGCAC CATGACGAAA AGCAGCTTGG GGAAGGGAAA GTGAAGGGAC TGAGGTAGCA
  GAATAAGCTC CATTTTGTTG AAGACTCCAT TCTAAGTTAA TTTGCCCTTA GAGAGGCATG
  R
  CCACTACCCT GTGAGGTCTG AGAAAAAGCA TGAAATGTCC CTGGCAGTTG CAAAATAGAC
  ACAGCAGCTG CAGCGAGCTG ATAACAAGAG AGTGGACTAA GAAAACATAA ATCAGCTGGG
  CAGTGATGGC ATATGCCTTT AATCCCAGCA CTTGGGAAGC AGACGGATTT CTGAGTTCGA
  GGCCAGCCTG GTCTACAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52570509	NES15642341	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50437248					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52570509	NES15642341	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74791950 () rs orientation: forward

Symbol	Name	Function Class
Gm62792	predicted gene, 62792	within coordinates
Rr504378	regulatory region 504378	708 bp distal
Rr504379	regulatory region 504379	within coordinates
Rr504380	regulatory region 504380	457 bp distal
Rr504381	regulatory region 504381	349 bp proximal
Rr504382	regulatory region 504382	673 bp proximal
Rr504383	regulatory region 504383	1216 bp proximal
Tssr131597	transcription start site region 131597	1372 bp downstream
Tssr131598	transcription start site region 131598	1333 bp downstream
Tssr134806	transcription start site region 134806	675 bp downstream