rs50437414 SNP Detail

Summary

• ID
  rs50437414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12329392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGTTGGA AGTGGGCGTT
  TTGCAGGAGG GGTGAGGGAG CCTGATAGGG TTCTGGCCCT GACAGAGGAG CTTATGGGAT
  GAACACTGGA AAATGTACTG CCGCTGTGTG CTGAGGAGAA AGGTCTGAAG AGCAAGTGGT
  AGGGGCCAGA GGCAAGGGAT GCTACAGCCA GGCAGTACTC CAGCCTGGAT CCCAACAACC
  Y
  AGGCAGGGAA TTATGAAGAG AGACTGTCTA GTATGGCTGT CCTCTCCTGG TGCAATGAGT
  GAAGAAGCAG TCTCCCAGGG AGACTGAGGC AGGACCATGT GGAAGTTGTC ACCCAGGGCC
  AGTGGCCTGG TTTCTGTAGT GATAAAAGGA AGCTATGAGA GGTAGTGAAA GGAGAGTAGC
  GGGAGGCAGA GAGAGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60572173	NES16031365	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50437414					SNP	T	T	T	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572173	NES16031365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12329392 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	within coordinates
Rr659697	regulatory region 659697	203 bp distal