rs50438812 SNP Detail

Summary

• ID
  rs50438812
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTGTTA TTGTTGAGGT
  TCAAGTTCTA GTCACAGTAC TTAATAGTAG TTCAATTATT CTGCCCGACG AACGTCTTAA
  CACTAACGCT GAGGCTTTTT CTCAGACCAA AGTGATGGGG GCTCACAAAA CGATTTGCCG
  CTCAGAACCC GAACAGGGTG CCTGCTGACT CAGGGGGAGG TATATATCAA GCCAGGAAGT
  W
  GACATTCGCA ATGAAATCTT TATGCATGCT GAAATATCAG CTGGTATCAA ACGGAACACT
  TAGGGTTTGA GAGGTAATGT ACTGAGTATG AAAATCAGCG ACGAAGCTGG AATCTGGAGG
  TAGCGTAACT AAAAAAACAA AAAGTTAAGG TGAAAAGTTC TGTGTTCCTC TGAGCTTTTA
  AGTCTCACTT TAACAGGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60499942	NES16521737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50438812					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60499942	NES16521737	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	420 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Tssr139178	transcription start site region 139178	1997 bp downstream
Tssr139179	transcription start site region 139179	1777 bp downstream
Tssr139180	transcription start site region 139180	1748 bp downstream
Tssr139181	transcription start site region 139181	1559 bp downstream
Tssr139182	transcription start site region 139182	1507 bp downstream
Tssr139183	transcription start site region 139183	1478 bp downstream
Tssr139184	transcription start site region 139184	1455 bp downstream
Tssr139185	transcription start site region 139185	1414 bp downstream
Tssr139186	transcription start site region 139186	1358 bp downstream
Tssr139187	transcription start site region 139187	1338 bp downstream
Tssr139188	transcription start site region 139188	1320 bp downstream
Tssr139189	transcription start site region 139189	1229 bp downstream
Tssr139190	transcription start site region 139190	1213 bp downstream