rs50439543 SNP Detail

Summary

• ID
  rs50439543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46399972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTCCAGT GCCTAGTCGC
  ACAGTAAAAT CATGACATTA AACTGCCCCA CAGACCTACC AGGGTCCTGC GGCTCATTCA
  TCTCACATCC TGGATCTTTT AGCTTCTCTT CCTTTCTTTC CTGACACACC AACACCCTTT
  GTCTTCCTCT CAGCACAGTC TTGCTTTCTA TTTCAGGGGG AAAAGGAAGC CATCAAAAAC
  R
  CACTTACAAA GGTTCCCACC ACCACAGGCA CCAGCCAGCC GGTATTTCTT CGCAGACTCT
  GCCCACACCA ATCCTTCAGG CCTACCCTCC CCTTCTTTGT GTTTGGTTCA CATAGACAGA
  GGTGACCCGG TATTTCAGAA TGTTATCGAC ACGAAACATT ACAGTCTGTT GGACACACAG
  CATGATGTCA CATCATAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149179885	ENSMUSSNP3854958	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50439543					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46399972 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	635 bp proximal
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1078 bp downstream
Rr646777	regulatory region 646777	1855 bp distal
Saa2	serum amyloid A 2	1285 bp upstream
Tssr66700	transcription start site region 66700	1284 bp upstream
Tssr66701	transcription start site region 66701	1805 bp upstream