rs50439889 SNP Detail

Summary

• ID
  rs50439889
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78523729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAATTA GACTGTATAA
  ATTGCTCCAT TTCTTAAGTG GTTTTTTTTT TCCCCCAGCA AAGAAATCGT TATTTTTACG
  TGTGTGTGTT CATTTGTAGC TCAGGCTGGG CAGTCTTCAG TTTTGAGTGG CAGGAGTCTA
  GGCGTGCAAT TACCACACCC GGCCTCCTTG GGGGACTTTC ATGTTTCCTA ACTCGGAGAT
  K
  TCATTGCTGG GTATTTATTT TCAGGTGGTC AGGTGGTGAT TTCAATTAAT GGGACTAGTT
  AGATGACCCC CCCCCCCGTT ATATAGATTT GAGCAGGCTG AATCATAAAT CTAGGGGTGT
  GTGTGTGCAC ACATGCGCTC GTGCGCGTGC TTCCTAAGAA AATAATGTGG AGATGAAGTC
  ACCTTAACGA GGCTTGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss61426855	NES16809514	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs50439889					SNP	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426855	NES16809514	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78523729 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	Intron
Cpgi22073	CpG island 22073	363 bp distal
Gm69315	predicted gene, 69315	790 bp upstream
Rr683597	regulatory region 683597	1851 bp distal
Rr683598	regulatory region 683598	891 bp distal
Rr683599	regulatory region 683599	300 bp distal
Tssr86295	transcription start site region 86295	973 bp downstream
Tssr86296	transcription start site region 86296	954 bp downstream
Tssr86297	transcription start site region 86297	938 bp downstream
Tssr86298	transcription start site region 86298	704 bp downstream
Tssr86299	transcription start site region 86299	661 bp downstream
Tssr86300	transcription start site region 86300	638 bp downstream
Tssr86301	transcription start site region 86301	615 bp downstream
Tssr86302	transcription start site region 86302	566 bp downstream
Tssr90659	transcription start site region 90659	790 bp upstream