rs50439970 SNP Detail

Summary

• ID
  rs50439970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31217056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCGTCAG TCAAGCCCAG
  GCGTCGGCAG CAGAATCTTC TAGCTGACCT GGGCTCCTCC TTAGACCAGA AAACTGTGGG
  CTGCAGCAGT CCCGGAGAAC TCTCTCTCCA TGGCACTGCC CCCGCTATTT CCGTTGGGGA
  GACGGAAGTC CCTCCCCAAT GCCGGAAGTG CAGCGGCCTT ACTTCCGCAG AGTCTCTCGA
  R
  ACGCGGAGTA GATTGGTTTC CGGCCCCGGG TGGGCGCGGA CTTGGTTCAG TGCGCGCTCC
  GGAGCGGTGT CCCGGGAGCG CGGTCCTGCG GGCCGCTTGC GCGGGGATCC GGGGGGACTG
  CGGCCGCGCG AGGAGAGCTC CAATCCGGGT GCCGGGCAAG TGCAAGGCCA TGAACGGCAC
  GGCGAACCCG CTGCTGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52709805	NES15559263	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50439970					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709805	NES15559263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31217056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	within coordinates
Eaf1	ELL associated factor 1	within coordinates
Gm63056	predicted gene, 63056	833 bp upstream
Mettl6	methyltransferase 6, methylcytidine	59 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	732 bp downstream
Tssr124944	transcription start site region 124944	4 bp downstream
Tssr124945	transcription start site region 124945	within coordinates
Tssr124946	transcription start site region 124946	1318 bp upstream
Tssr127965	transcription start site region 127965	834 bp upstream
Tssr127966	transcription start site region 127966	114 bp upstream
Tssr127967	transcription start site region 127967	45 bp upstream