rs50440137 SNP Detail

Summary

• ID
  rs50440137
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104224330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAGGGGCT CGGGGCAAGA AGCTCGCGCG GCCTCCGCTT
  GGCTCTGCGC CCGTCTACTT GTGAGCATAG AGGCTTGGCT AAAAGCAGGC GCTGGAGAAT
  T
  AGCAGAGTCC TAGAGGGGGC TGCAGCGGCT GCCTAGGAGC GTGGCGGGCT CCCAGCGCAA
  CCCCCAACCC CACCCCCTGC GACGAACCGC AGGGCGGGG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147155087	ENSMUSSNP6142625	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321240841	CHEV_4_104039738	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50440137					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104224330 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14517	CpG island 14517			within coordinates
Cpgi14518	CpG island 14518			1644 bp proximal
Dab1	disabled 1			Intron
				mRNA-UTR
Rr376948	regulatory region 376948			794 bp upstream
Rr596451	regulatory region 596451			95 bp distal
Rr596452	regulatory region 596452			within coordinates
Rr596453	regulatory region 596453			468 bp proximal
Rr596454	regulatory region 596454			1509 bp proximal
Tssr38124	transcription start site region 38124			197 bp upstream
Tssr38125	transcription start site region 38125			416 bp upstream
Tssr38126	transcription start site region 38126			460 bp upstream
Tssr38127	transcription start site region 38127			495 bp upstream
Tssr38128	transcription start site region 38128			506 bp upstream