rs50441127 SNP Detail

Summary

• ID
  rs50441127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51366156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACGAGAGG GATTGGGTGC ATGATGTGAA ATTCTCAAAA
  AATCAATTAA AAGTTTTTTT TGTTGTTGTT TTTTTTTTAA AGCTATTTTT AAAGATGCGT
  R
  TGGGGTAAAG GAACTATATG AATGTAATTG CAGGTGCCCA AAGAGGCCAA AAGCACCAGC
  TATATATATA TATATATATA TTTTTTTTTT TTTTTTGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139475191	ENSMUSSNP4429678	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324621294	CHEV_14_51748374	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50441127					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51366156 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	within coordinates
Rr491778	regulatory region 491778	122 bp distal
Rr491779	regulatory region 491779	74 bp proximal
Tssr125412	transcription start site region 125412	206 bp upstream
Tssr125413	transcription start site region 125413	231 bp upstream
Tssr125414	transcription start site region 125414	281 bp upstream
Tssr125415	transcription start site region 125415	308 bp upstream
Tssr125416	transcription start site region 125416	340 bp upstream
Tssr125417	transcription start site region 125417	356 bp upstream
Tssr125418	transcription start site region 125418	386 bp upstream
Tssr125419	transcription start site region 125419	419 bp upstream