rs50441642 SNP Detail

Summary

• ID
  rs50441642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4218983 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTGTC AGGAAATCGG GTAAGCCCTT
  Y
  GCCTTGTGGA GCATGGTAGT TAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52129295	NES15245699	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50441642					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52129295	NES15245699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4218983 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	within coordinates
Cpgi1267	CpG island 1267	1841 bp distal
Gm67397	predicted gene, 67397	within coordinates
Rr384064	regulatory region 384064	128 bp upstream
Rr426945	regulatory region 426945	1687 bp distal
Tssr92242	transcription start site region 92242	499 bp downstream