rs50442092 SNP Detail

Summary

• ID
  rs50442092
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32524212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTCTCCT GGCTTGTAGA TGTCACCTTG CATCTGGTCA
  TGACACACTT CCTCTCCATG TGCTTGCGTT CCAATTTCCT ATTGTAAGGA CAGTGACTCC
  S
  TTTCATTAGG AACCACCCTA ATGACCCCAC ATTACCTTAA TTTCCATTTA AAGACCATAG
  CTCCCAGCCA GCCAGATGGC CTGGTAGGTA AAGGCGCTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148847951	ENSMUSSNP3013384	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
ss324311986	CHEV_13_32432098	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50442092					SNP	C	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32524212 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	within coordinates
Cpgi5422	CpG island 5422	1274 bp distal
Gmds	GDP-mannose 4, 6-dehydratase	1489 bp upstream
Rr369665	regulatory region 369665	1309 bp downstream
Rr476844	regulatory region 476844	1481 bp distal
Rr476845	regulatory region 476845	999 bp distal
Tssr121995	transcription start site region 121995	1687 bp upstream
Tssr121996	transcription start site region 121996	1665 bp upstream
Tssr121997	transcription start site region 121997	1569 bp upstream