rs50442105 SNP Detail

Summary

• ID
  rs50442105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70896924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAGAGAT AAGAGGTAGA
  AAAGAAATAA ATGCCATTCT CTCTTGCTCT GTCAAGGAGT CAACTAATAA AACTAGCCTG
  CTCATTCTTG TGTTTCATTT ATGCTGTGTG CAATCAAGCA CACTCATCGG ACCTATGTAT
  CTTGGTTGCA AAAAGAGATA TTCAGCTATG GATTTTCTAA GAGGTCATGA GGGTACAACA
  Y
  AGATAATACA AACGATTGAA TATCAAGTAC AGATGTGACT TCATTTGTAG ATCCCGGTTG
  AAAGACTTGA AGTTTGTCTA TTTTAAGTAT CTATCAGAAT GTAAATTCTG TACTTGTAGA
  ACTCTGAGAG AGTTTACCAC CACCTGGGAG CCATTTTCAC CCGACTTCAG TTCATCTACT
  GGGAAGGTAT GCTATTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652471	NES15473964	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C	T		C
ss324416641	CHEV_13_70887683	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50442105					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652471	NES15473964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70896924 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Rr284828	regulatory region 284828	1781 bp distal
Tssr123156	transcription start site region 123156	1277 bp downstream