rs50442908 SNP Detail

Summary

• ID
  rs50442908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46738812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAAATC TCATCTGAAT
  AACTGCATAA CTGGTAAAAA AATAATGTTT ATAATAAAGT CTGCTTTAAA AGTTAAAATG
  CATTCTACAA CTTAAATTTA TTCTATCAAT GATTTGGGGG CAGTGGTTTC TACGGGGTTT
  TTTTAAATTA ATTTTGTTAT TTGTCAGTTT CACAAGTCTG TAATGTAGTC TGATTTCTGC
  Y
  ATCCTACACA CCATCTCCTG TCTCATTTTG AACACTACCA CTTGGGTCCC TACTGTTCCT
  TCCCAGGTTC ATCATCTTCA GTTTGTGTTT TGTTCTGTGA CCCATTTAGT TTAACCGGAG
  CCATCTGTGT GACCATTGGG TTGGAACTAT CCCTCACCTT CTGGGGTGAT CATTGGTGAC
  TCCACAACAT TTTACACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62759528	NES17344212	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50442908					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62759528	NES17344212	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46738812 () rs orientation: forward

Symbol	Name	Function Class
Crip3	cysteine-rich protein 3	1040 bp upstream
Rr527733	regulatory region 527733	828 bp proximal
Rr527734	regulatory region 527734	1076 bp proximal
Tssr144853	transcription start site region 144853	1031 bp upstream
Tssr144854	transcription start site region 144854	1044 bp upstream