rs50443599 SNP Detail

Summary

• ID
  rs50443599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65543887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGAGTC TAATACTACT
  TTTCATGGCA GTTGTGTGTT GCCCGTGGTC ACTTTACAAG CAGAAGGGGC ATTCATCTAT
  GTGTGTGATC TGGAGGAAGT TTTCTAATTC CCTGAGCTTG TGTCTGCAAA ACAGAGATGA
  TGTAGATGAA GTTAGAAGTG AGTAATTTAT GAGGTGAGTT CTTTAGTATA TATGAGGAGT
  R
  CAGATCTAAC AACTCTAAAT GCTTGTATCT TTATCCACCC TCTCGACTTC CCTAGCAAAT
  ACTCACAATT ACTTTCTAAA GTGTAGGAAT GAAGACACCA AGGCTCCTCA AGGTTTAAAA
  AAAAAATCAC ACAATTTGTA GAAAACTTTC TAGTGTACAA CCAGACTTCT TTAATGTGTG
  AATTGTGTTT TCCAACAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135252841	ENSMUSSNP2300024	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50443599					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65543887 () rs orientation: forward

Symbol	Name	Function Class
Rr577715	regulatory region 577715	235 bp distal
Rr577716	regulatory region 577716	852 bp proximal