rs50445394 SNP Detail

Summary

• ID
  rs50445394
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113881435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTT CATCTCCACA AGAGGAAGTG
  W
  GTCGATTAAT TTGATTACAA CTGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147245839	ENSMUSSNP6293106	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320462306	CHEV_2_113876690	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50445394					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113881435 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	474 bp upstream
Tssr19435	transcription start site region 19435	1776 bp downstream
Tssr19436	transcription start site region 19436	1372 bp downstream
Tssr19437	transcription start site region 19437	650 bp downstream
Tssr19438	transcription start site region 19438	534 bp downstream
Tssr19439	transcription start site region 19439	501 bp downstream
Tssr25670	transcription start site region 25670	1712 bp upstream
Tssr25671	transcription start site region 25671	1649 bp upstream
Tssr25672	transcription start site region 25672	1632 bp upstream
Tssr25673	transcription start site region 25673	1601 bp upstream
Tssr25674	transcription start site region 25674	1355 bp upstream
Tssr25675	transcription start site region 25675	1323 bp upstream
Tssr25676	transcription start site region 25676	1300 bp upstream
Tssr25677	transcription start site region 25677	1275 bp upstream
Tssr25678	transcription start site region 25678	610 bp upstream
Tssr25679	transcription start site region 25679	600 bp upstream
Tssr25680	transcription start site region 25680	589 bp upstream
Tssr25681	transcription start site region 25681	505 bp upstream
Tssr25682	transcription start site region 25682	466 bp upstream
Tssr25683	transcription start site region 25683	457 bp upstream
Tssr25684	transcription start site region 25684	339 bp upstream
Tssr25685	transcription start site region 25685	1 bp downstream
Tssr25686	transcription start site region 25686	344 bp downstream
Tssr25687	transcription start site region 25687	975 bp downstream
Tssr25688	transcription start site region 25688	1039 bp downstream
Tssr25689	transcription start site region 25689	1105 bp downstream
Tssr25690	transcription start site region 25690	1123 bp downstream
Tssr25691	transcription start site region 25691	1245 bp downstream
Tssr25692	transcription start site region 25692	1850 bp downstream