rs50447225 SNP Detail

Summary

• ID
  rs50447225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190734330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGAAGGGAA AGCAGCAATC CTGAAGCTCT GTGTTCAGCA
  TCTGAGGCTA GTGACAGAAT CATCTGGCCT CTAAAGGACT TGGGAAGCTC TGCCTCTCTC
  Y
  TGAGTCAACT TGATCCTGGC CTACAACTTT CCCTGGCAGA AATCCCGTGG CTCTGGCATC
  TGTAATATCC TGGGCTCTCC ACTGCAATTG AGGCTTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146500608	ENSMUSSNP5105451	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50447225					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190734330 () rs orientation: forward

Symbol	Name	Function Class
Gm8407	predicted gene 8407	282 bp upstream
Gm37095	predicted gene, 37095	1335 bp upstream
Gm70616	predicted gene, 70616	1877 bp upstream
Rr426021	regulatory region 426021	267 bp proximal