rs50449921 SNP Detail

Summary

• ID
  rs50449921
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25795372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAGCCTC CAGCTGCTTA
  GCTCAGTCTA GGTTTTGCTT TCTATGTGAA CCACAGCTGA ATGTAACAGC TCAACTACCA
  GATGTTCAAT ACATGTACAC ACACACACAC ACACACACGT GGTATAAGCC ACAGCTTGCT
  CTGACTAGTA TAAGGGATGC CTTCCTTCTA GATAATTGTA AAACATTCAA CTTAAGGGAC
  K
  CATAGTTTTT AATCTACATT TTTTTAACAT TGTGATAAAA CCAGGCATGA TGATACACAT
  CTGTAATCCT AATACTTATA AGACAAAGGC AAGAGGATGG CTTCAAGTTC AAGGCCATCC
  TGAGCTACAT AGTAAGATGT CTCAAAAAAA AGGGGGGTGT CAGGGATTCA CGATTCACAT
  AAGCCAAAGG ATTCAGCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552821	NES16573265	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50449921					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552821	NES16573265	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25795372 () rs orientation: forward

Symbol	Name	Function Class
Cerox1	cytoplasmic endogenous regulator of oxidative phosphorylation 1	1355 bp downstream
Rr523610	regulatory region 523610	428 bp distal
Rr523611	regulatory region 523611	84 bp distal
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143167	transcription start site region 143167	1973 bp downstream