rs50451257 SNP Detail

Summary

• ID
  rs50451257
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148713099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TTGCATTTTT TATTTATTTT
  G
  TGTGTTCACG TCTCTGTGGG AAACC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148013383	ENSMUSSNP485140	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321421562	CHEV_4_148002751	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50451257					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148713099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	1430 bp distal
Rr100546	regulatory region 100546	1098 bp distal
Rr398860	regulatory region 398860	1392 bp downstream
Tardbp	TAR DNA binding protein	1623 bp upstream
Tssr44612	transcription start site region 44612	1896 bp upstream
Tssr44613	transcription start site region 44613	1867 bp upstream
Tssr44614	transcription start site region 44614	1609 bp upstream