rs50452284 SNP Detail

Summary

• ID
  rs50452284
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCCAGCC CCTTCCACGC
  TTGTGAGTTG CATCACTCTG AGCCCTGGGT TGCATTGGAG CAGGTGGTGT ACAGAGTCAG
  GAACTGTTGT TTTCTTACAA GATATTTTTG GGTGGTCTGG TTCCTTCTGT TTCTAGCAGA
  CAGGGTAAAG CAGCCTACAC TTGCATTTAG ATTTATTCAC AACCTGTATG TAACAGAAGC
  M
  CAGCAGTGAC TGGAGACCCA CTCCTGAGTC AAGATGCCAA TGCTATGGGA GTGACCTCAT
  CTGCAAAAGC CACCGACACT GCCCAAACCA CCTTGCAACA CATCATCCAT CTCGTGCATG
  CATGCGTGTG CCTGTGCGTG AGTGTGTGCG TGTGTGTGTG TGCATACTTT AAGCAAGTCA
  TCACAGTATG GTTCATGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135862650	ENSMUSSNP4247817	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320953861	CHEV_3_127112207	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs50452284					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202938 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	374 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1991 bp distal
Rr584773	regulatory region 584773	333 bp distal
Rr584774	regulatory region 584774	within coordinates
Tssr35571	transcription start site region 35571	402 bp upstream
Tssr35572	transcription start site region 35572	308 bp upstream
Tssr35573	transcription start site region 35573	281 bp upstream
Tssr35574	transcription start site region 35574	246 bp upstream
Tssr35575	transcription start site region 35575	225 bp upstream