rs50453541 SNP Detail

Summary

• ID
  rs50453541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:119497602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA CCCTGCTCTG GTTTGGACTT
  R
  CAGATTCTGC TTCAATAAAG ACTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52698269	NES15540399	PERLEGEN	MM_PANEL2	f	SNP			A		A	A		G
ss145469228	ENSMUSSNP7077785	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss324555654	CHEV_13_120149873	CHEVERUD	SCREENING_POP	f	SNP				G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs50453541					SNP	A	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52698269	NES15540399	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:119497602 () rs orientation: forward

Symbol	Name	Function Class
Nnt	nicotinamide nucleotide transhydrogenase	within coordinates
Rr270671	regulatory region 270671	1799 bp proximal
Rr285834	regulatory region 285834	1994 bp distal