rs50453545 SNP Detail

Summary

• ID
  rs50453545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25379086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGAGTCAG GCATGGAGGG GAAGAGACAG CTCAGTACCT
  TTGAAATGCT TGGTTTGGGA GTTTGAATCT CTTCCCATGC TGGGTAAAGT GGGCTAAAGG
  Y
  GGCTGATTAC TTTGCAGGAG GCATCTCTTC CTCGAGTGTT CAAGCTCTTC CGGGCTCTGG
  GCCTGAGGCA CCTGGTAGTA GTAGACAACC ACAATCAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145379457	ENSMUSSNP3841852	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325336430	CHEV_17_25297057	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50453545					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25379086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clcn7	chloride channel, voltage-sensitive 7			Intron
				Noncoding-Transcript-Variant
Mir12188	microRNA 12188			391 bp upstream
Tssr143140	transcription start site region 143140			413 bp downstream