rs50454470 SNP Detail

Summary

• ID
  rs50454470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170825530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC CCCAGAAATG GTCACACTGC
  R
  CAGAACTTTG GGCAACATTT TTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60345141	NES15844853	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	A	A	G	A	A		A	A	A	A		A
ss146150329	ENSMUSSNP410725	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320115473	CHEV_1_172928092	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50454470					SNP	A	A	A	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345141	NES15844853	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170825530 () rs orientation: forward

Symbol	Name	Function Class
Rr396544	regulatory region 396544	within coordinates
Rr396545	regulatory region 396545	470 bp upstream
Rr423178	regulatory region 423178	905 bp distal
Rr423179	regulatory region 423179	988 bp distal
Rr423180	regulatory region 423180	within coordinates
Tssr9941	transcription start site region 9941	604 bp upstream