rs50455252 SNP Detail

Summary

• ID
  rs50455252
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:105359064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGATTC CTAGCAGGGT
  CTTAGTGCCT CACCCACCAG AGCCGCAACA AGATGCAGTC CTGGAGCCTG GAAGTCACTT
  CCTGGGGTCT CTAACCTGAG ACCTGCTAGG CAGATGCGTA GCAGCAAACA CACTAGCTGT
  CTGAGAAACA CCTTCTGGTG TGCTCTCAAG GTCGGGTTGG GACTCTGACT GTGTTCTTAT
  G
  TTTAGGGAGC TTGGTTATCA AACAGCACCT TTGGAGCCAT CTGGATCCTT CTGGAGAAGT
  CTATTGCACA GGTAACCCAA CAAACAGACT AGGAGGAAGT GTTAGAAGAA AAAACAAATC
  CAGTATGAGA TTCCCCCAAA GGCAAGGTTC ATATAAATTT GGACATAAGT ATAAGAGAAT
  GAATCCACTC TGAACATCCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147504723	ENSMUSSNP3077559	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50455252					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105359064 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930588G05Rik	RIKEN cDNA 4930588G05 gene			837 bp downstream
Rr438484	regulatory region 438484			415 bp distal
Rr438485	regulatory region 438485			within coordinates
Tmtc2	transmembrane and tetratricopeptide repeat containing 2			Intron
				Noncoding-Transcript-Variant
Tssr99169	transcription start site region 99169			1408 bp upstream
Tssr99170	transcription start site region 99170			1186 bp upstream