rs50455559 SNP Detail

Summary

• ID
  rs50455559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79895749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTTCTGGA GGTCGAACTC ATGTCCCCCT GACTTGTCAG
  CTATCATTTT GGTCCGCTGA GCCACCTTGC TGGCCTTATT CTGTAATTTG CTAATGGAGC
  Y
  AGTGAATGAA ACATTGGAAG GCATGTGTTC TTATCGCAGC TGTCCCTGTT AAGGGCAGGA
  ATTTTTTTAT AGCATCATTT CTAAATGTGG AAGAACCACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61024260	NES16111179	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50455559					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61024260	NES16111179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79895749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	113 bp proximal
Gm73873	predicted gene, 73873	within coordinates
Rr165873	regulatory region 165873	753 bp distal
Rr168083	regulatory region 168083	within coordinates
Rr400401	regulatory region 400401	194 bp upstream
Tssr2310	transcription start site region 2310	358 bp upstream
Tssr67422	transcription start site region 67422	368 bp upstream
Tssr67423	transcription start site region 67423	374 bp upstream
Tssr67424	transcription start site region 67424	429 bp upstream
Tssr67425	transcription start site region 67425	446 bp upstream
Tssr67426	transcription start site region 67426	505 bp upstream
Tssr67427	transcription start site region 67427	528 bp upstream
Ttll13	tubulin tyrosine ligase-like family, member 13	375 bp upstream