rs50457509 SNP Detail

Summary

• ID
  rs50457509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121502963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTAAGTT AGCTCATAGC
  TATGAGCTGG CAGCCAAAGC CATATTTCCT ACTTCTAAGA TGGGACCTGT CCATGTCTCA
  TGTTCGGGAC ATGCTGGGCC AGCATGCTAA CAGCACTTTT CACCCATGAG GTTCCAGATG
  CCCATCATCC ATTGTGCTTG GCACAATGCA AAGCAGGAAA CAATAACAAA CAACAAAAAC
  Y
  CTAAGGTTTA ATTACAGAAG CAATTCCTCC AAGGTTATCT CGGGACATGC AAAATTGGGA
  TTTGAATTTT GGGGTGTCTG TCTCAAAAAC CCATACTGTT CCCACTGAGT CTCGCCAGCT
  GAAATCTGCA GCCATGAGTT GTTTGCCGGG TCCTTTCAGG TCCTTGCCCT GCGTCTAGAT
  TTGAATTCAC ACTGGCATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135727198	ENSMUSSNP4679956	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50457509					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121502963 () rs orientation: forward

Symbol	Name	Function Class
D3Mit288	DNA segment, Chr 3, Massachusetts Institute of Technology 288	475 bp distal
Gm43607	predicted gene 43607	1942 bp downstream
Gm43608	predicted gene 43608	within coordinates