rs50458196 SNP Detail

Summary

• ID
  rs50458196
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46343672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTAGTT CAGCTGAACA
  GCAGATGACC ATAAAGCACT CAGAGCTAAG TGAGCTCTCT GAGCAGAGAC AAGAACCCTG
  GAGGCACCTG GCAAACGTAA TGGTAGAATA TATTTTTTTA ACTTCTTGTT TTTCCCTCTT
  GACTGAAATC ACCCCTTCTA GTCGCATGCT TGTAGTTGAT AGGGATTTAG CAGAAGAACC
  M
  AGAAGGAGAA CGAGAAGGGT AAAGGTATTG CTGAGGGACT TCTTGTCCAT TCTTCAAAAG
  ATCACTGAAA GGCCAGCTAG AAGGCTCTGT GGACAAAGTG CTTGCGCACA AGCCAGTCAA
  CCTGATTTCA GGCCCTGGAA TCTACGTAAA GAAGTAGGAT GTGGTGAACC CATGTGTAAC
  CCCAGCACTC CTACAGGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61787359	NES17720978	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50458196					SNP	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61787359	NES17720978	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46343672 () rs orientation: forward

Symbol	Name	Function Class
Gm10113	predicted gene 10113	within coordinates
Rr272082	regulatory region 272082	1072 bp distal
Rr276190	regulatory region 276190	1672 bp distal