rs50459244 SNP Detail

Summary

• ID
  rs50459244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36916821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTATGAA AATTTTGGTC
  ATCTTCAGGC TGAGGTTCAT CAAATGCATC TCTCCTGAAA TTACTGTTTC ATTATTTCTA
  TTCTCATCTA CTAGGAAAAC AGAGTCCCCA AACATCCTCC AGGTGAAGTC CCTATCTTAA
  AACATTAGCT GTTTCTTAAT CTATGAACAT TAGTCGTCTA ACTGCAAAAT GCCACACTCA
  Y
  TTATTTCTAA CACTTACAGC ATTTGCTGCC CTTGGGATCT ATGTCCTAGG ATGGTTGCAG
  CTCTTTGAAC TAATGTCAAA GGCACAAAAC CACCAGATGC AAAGCATTAA GTCATCTCCT
  AAAATTAAAG GAAAAGGCAA CATCCCGGTG CATGCTCCTT GCTTTGCAAA AATCCCAGTT
  TCTGCAAAAC AATAAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61769739	NES17697929	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50459244					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61769739	NES17697929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36916821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5450	CpG island 5450	504 bp distal
Cpgi5451	CpG island 5451	1964 bp proximal
Gm30177	predicted gene, 30177	1545 bp downstream
Nrn1	neuritin 1	Intron
Rr477392	regulatory region 477392	1112 bp distal
Rr477393	regulatory region 477393	611 bp distal
Rr477394	regulatory region 477394	390 bp proximal
Rr477395	regulatory region 477395	1620 bp proximal
Tssr122097	transcription start site region 122097	1419 bp downstream
Tssr122098	transcription start site region 122098	1446 bp downstream
Tssr122099	transcription start site region 122099	1524 bp downstream
Tssr122100	transcription start site region 122100	1557 bp downstream
Tssr122101	transcription start site region 122101	1579 bp downstream
Tssr122102	transcription start site region 122102	1603 bp downstream