rs50459497 SNP Detail

Summary

• ID
  rs50459497
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88203878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAGTCAA ATCAAGGCTT
  TGCTGAATGG CCCTCTCCGT GGAATTCTAC ATTTAATCGC ATAAAGTGCT AATGTTGCAT
  GTTTGAAACT GAACTCTACA ATACGTGCTA AGTGCATGCC CAGGTGAACT GTCAACACAC
  ACAAATGATT CCCTCCTGTT CTCTGCAGTT AGCTCTCTGC TCCAGTCTCC ACCTTAAATC
  T
  GGACTTCAGT CTACTGCATG TTAGGAAAGG CCGCGCCAAA AACGTGTCTC TCAGAACAAT
  CAACAAGATG AGGGATTCAT GGCAAGCTTG CTAGGACATA GATTTGTTAA CCGACAACTG
  CAGCCCTAGG TGTCTATGTG TTGGCCAGAC CTCAGGGAGG GCTCTTATAC CAACTTGTAT
  AGTCTCAAAC TCTTCAGCAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144900172	ENSMUSSNP7129439	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50459497					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88203878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	724 bp proximal
Cpgi541	CpG island 541	1991 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12872	transcription start site region 12872	1972 bp upstream
Tssr12873	transcription start site region 12873	1108 bp downstream
Tssr12874	transcription start site region 12874	1314 bp downstream
Tssr12875	transcription start site region 12875	1354 bp downstream