rs50459798 SNP Detail

Summary

• ID
  rs50459798
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86344300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGA GCACGGGTTG TTCTTCAGAG
  W
  CAGGTTCAAT TCCCAGCACC CACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133356574	ENSMUSSNP3618407	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321846308	CHEV_6_86317312	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50459798					SNP	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86344300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17660	CpG island 17660	875 bp distal
Fam136a	family with sequence similarity 136, member A	within coordinates
Gm56967	predicted gene, 56967	1745 bp upstream
Rr146577	regulatory region 146577	299 bp distal
Rr368110	regulatory region 368110	1731 bp downstream
Tssr57460	transcription start site region 57460	1660 bp downstream
Tssr57461	transcription start site region 57461	1595 bp downstream
Tssr61788	transcription start site region 61788	1773 bp upstream