rs50460541 SNP Detail

Summary

• ID
  rs50460541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32304068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCTGGG CAGTGGTGGC
  GCACTCCTTT AATCCCAGCA CTTGGGAGAC AGAGGGAGGT GGATTTCTGA GTTTGAGGCC
  AGCCTGGTCT ACAGAGTGAA TTCCAGGACA GCCAGGGCTA CACAGAGGAA ACCCTGTCTC
  GAAAAAAGAA AACAAAAACA AACAAACAAA CAAACAAACA AAGGCAACCT CCAGTGTGGC
  Y
  ACTCAAACTG TCTGCAGACA TGCCAGATAC CTCCTGGGCT GTGAACTGCT GGTGTAAGAT
  GTTTGTCCTG CTACCTCTAC TCTCTAAATA GGCGGAGCTT TGGAGCTAGA TGTAGCAGCC
  ACTTGCTGGC ACGTGCTACA GAGTGCCACA AGGTATCTCT GGACATCAGC AGCTGATAGC
  AGTCTGGCTC AGAACATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63736660	NES17074302	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50460541					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63736660	NES17074302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32304068 () rs orientation: forward

Symbol	Name	Function Class
Rr514710	regulatory region 514710	within coordinates
Rr514711	regulatory region 514711	1882 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr140806	transcription start site region 140806	918 bp downstream
Tssr140807	transcription start site region 140807	1902 bp downstream
Tssr140808	transcription start site region 140808	1918 bp downstream
Tssr140809	transcription start site region 140809	1945 bp downstream
Tssr140810	transcription start site region 140810	1975 bp downstream