rs50460639 SNP Detail

Summary

• ID
  rs50460639
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134023172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCTTGGAA ACAGATGTTG GGCAACCTTT TGAAGACATT
  GGCAACCAAG AAGAAGCCCT GTACAGAAAC AGCAATAAGA GAAAAAGCCA GATACTCATG
  W
  GTGTGTGTGC ATCTCATGTG GTTTCAAAGT GGTCCAGGAC CACTGATCCC TACTGATTTG
  GGCCAGTAAA AAGGTAGAAC AACACAACAA CATGGCACAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60847184	NES16015978	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs50460639					SNP	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847184	NES16015978	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134023172 () rs orientation: forward

Symbol	Name	Function Class
D5Mit141	DNA segment, Chr 5, Massachusetts Institute of Technology 141	1980 bp proximal
Rr127272	regulatory region 127272	1773 bp distal