rs50461003 SNP Detail

Summary

• ID
  rs50461003
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56918146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG AACTAAAATA AACCAACCCT
  M
  ATGACTAAGA ATGGGTGAGA GGAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62806703	NES17364173	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	C	C	A	A	C		A	C	C	A
ss145807858	ENSMUSSNP4194875	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50461003					SNP	A	A	C	C	C	A	C	C	C	A	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62806703	NES17364173	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56918146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	847 bp distal
Gm56912	predicted gene, 56912	182 bp downstream
Micos13	mitochondrial contact site and cristae organizing system subunit 13	1375 bp upstream
Rr340044	regulatory region 340044	345 bp distal
Rr340045	regulatory region 340045	454 bp proximal
Rr370299	regulatory region 370299	1203 bp downstream
Tssr145313	transcription start site region 145313	1230 bp downstream
Tssr148822	transcription start site region 148822	1460 bp upstream
Tssr148823	transcription start site region 148823	1431 bp upstream
Tssr148824	transcription start site region 148824	1327 bp upstream
Tssr148825	transcription start site region 148825	1312 bp upstream
Tssr148826	transcription start site region 148826	1207 bp upstream
Tssr148827	transcription start site region 148827	1175 bp upstream
Tssr148828	transcription start site region 148828	1141 bp upstream