rs50461111 SNP Detail

Summary

• ID
  rs50461111
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:58320043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA CACCCCACTA GCTCCATGCA
  K
  GCCTGTGGGG ACCCAGTACC TATGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60471649	NES16460357	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		G	T	G		T
ss325209507	CHEV_16_58499793	CHEVERUD	SCREENING_POP	f	SNP										T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs50461111					SNP	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60471649	NES16460357	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:58320043 () rs orientation: forward

Symbol	Name	Function Class
Rr404899	regulatory region 404899	983 bp downstream
Rr517409	regulatory region 517409	50 bp distal
Rr517410	regulatory region 517410	1967 bp proximal
St3gal6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	within coordinates
Tssr4919	transcription start site region 4919	167 bp downstream
Tssr4920	transcription start site region 4920	193 bp downstream
Tssr138857	transcription start site region 138857	961 bp downstream
Tssr141615	transcription start site region 141615	333 bp upstream
Tssr141616	transcription start site region 141616	318 bp upstream
Tssr141617	transcription start site region 141617	278 bp upstream
Tssr141618	transcription start site region 141618	139 bp downstream