rs50461474 SNP Detail

Summary

• ID
  rs50461474
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127763707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCTTAA ACGCCAATGT
  CAGAGCCCCA ATCAGAGATG CAGAAAACAA GACAAGCAAG GCCTGTTAAA AGCAGGTGCG
  TATTATATGT GTATATTGGG GAGCGTTTAT TTCCTTATTG GATTTTCAGT GGCCGTTGTG
  AACACAGTGA AAAGCACGTC TCTAATGTGA CTTTGGAGGA ATCCCATTTC TTCATTAACT
  S
  AGCATTGAGA ACAAAATACG GGGACCCCCC CCCCCCCCCG AGGTTAGGCT ACAGTGTGAG
  CCAGGCAGAA TAAAGAAGTT TTTCCTTCCT TTTTTCCCAC TTCCTTCAGC GAACTTAGCT
  TTACAAAGAC AATAACATTT CCCAAGAAAT TTTGTGGACA TCAGTTGTAG AAAACACGGA
  GACAGGGCCT ACTCTCAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135876674	ENSMUSSNP7025097	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320958796	CHEV_3_127672976	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50461474					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127763707 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	863 bp upstream
Gm65460	predicted gene, 65460	939 bp upstream
Rr52	regulatory region 52	within coordinates
Rr584913	regulatory region 584913	916 bp proximal
Rr584914	regulatory region 584914	1016 bp proximal