rs50461514 SNP Detail

Summary

• ID
  rs50461514
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125433866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTGCAGA GGGGCCTCAT GTTCCTGACT GAATGTATCT
  GAGTTAGAGT TTACCTGGGC ATCAGAGATG GATGTTATGA TTAAAGCTGC TATGTTTGGG
  T
  GTAAAGTTGA GAAAGGGCAG AAGGAGGATT GCTAGTCTAG ATCATCAACT TCTGAGCATT
  TAGAATCACC TAGGAGTCAC ACTTCAGTGA GTGGCGAGC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147482259	ENSMUSSNP4066743	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50461514					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125433866 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep152	centrosomal protein 152			Intron
				Noncoding-Transcript-Variant
Gm75597	predicted gene, 75597			within coordinates
Rr564236	regulatory region 564236			589 bp proximal
Tssr19898	transcription start site region 19898			290 bp downstream