rs50461600 SNP Detail

Summary

• ID
  rs50461600
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:15045686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACTTCCG ACAGAAGGGG CAGCTTTGAA AAGGCAATGG
  AACACTTCCC AGATTCCTAC TATACTTAAG ATAATGTAGG TGTAAAAGTG AAATTTCTCT
  A
  AAAAAAATAC ACACACACAC ACACACACTG TTTACATGTG GGAGAATCGA AGAGAGAATG
  AAGGATACAA GATATATTTC TGGATGAACA GAAATATCT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148694530	ENSMUSSNP5023708	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50461600					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15045686 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	Intron
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	within coordinates
Gm64037	predicted gene, 64037	328 bp downstream
Rr368499	regulatory region 368499	1018 bp downstream
Rr368500	regulatory region 368500	481 bp upstream
Rr660152	regulatory region 660152	1037 bp distal
Rr660153	regulatory region 660153	within coordinates
Rr660154	regulatory region 660154	347 bp proximal
Tssr76474	transcription start site region 76474	1028 bp downstream
Tssr76475	transcription start site region 76475	442 bp upstream
Tssr76476	transcription start site region 76476	470 bp upstream
Tssr76477	transcription start site region 76477	1314 bp upstream
Tssr80482	transcription start site region 80482	1186 bp upstream
Tssr80483	transcription start site region 80483	308 bp downstream