rs50461653 SNP Detail

Summary

• ID
  rs50461653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:86411370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAAGGGG TCTGCAACCA
  CGTCTTCTTA AGAATTCCTG TGATCAGCTA TTCTCTCAAC TACCACCACT GGCCAGAAGC
  CCACCCTGTA CCCCGCAGGT GACCCAGTTT CCAGGAAGCC TTTCTCACAG GCAGTCTTTG
  TCACACACTT CACTTCTCCA ATGTCTCTTA TTTCTGCTGG CTCTAATCTG CTCTCCCCAA
  Y
  CCCATTCCCA AATCCATGTG GGCACAAGAA TCACATGTGG GTCACATGAC TTCCGTAGGA
  CATTCTGTGG GGGCCTTATG CAAGTAGTTG TGTGCAGAGA CTCACCAGCT CAGCAGCAGC
  CACAGACACA GCTTTCCAGC TTTCCCGTTT TTTTCAGGCT CATAGCTCCT CTTACAGGCC
  TGACTTCAAA AGAAATTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147658555	ENSMUSSNP6405130	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50461653					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86411370 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10352	CpG island 10352			806 bp proximal
Cpgi10353	CpG island 10353			1556 bp proximal
Gm54041	predicted gene, 54041			within coordinates
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr542239	regulatory region 542239			within coordinates
Rr542240	regulatory region 542240			533 bp proximal
Rr542241	regulatory region 542241			1217 bp proximal
Rr542242	regulatory region 542242			1797 bp proximal
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon			within coordinates
Tssr152242	transcription start site region 152242			1527 bp upstream
Tssr152243	transcription start site region 152243			1548 bp upstream
Tssr152244	transcription start site region 152244			1565 bp upstream
Tssr152245	transcription start site region 152245			1673 bp upstream
Tssr152246	transcription start site region 152246			1707 bp upstream
Tssr152247	transcription start site region 152247			1757 bp upstream
Tssr152248	transcription start site region 152248			1939 bp upstream