rs50462058 SNP Detail

Summary

• ID
  rs50462058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46385085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTT ATCTTAAAAT TGTGTATTAG
  Y
  AAAACAATAT TAAGCGCTTC TTAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60312987	NES15818146	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	T	C	C		C	C	C		C
ss325822479	CHEV_19_46471136	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs50462058					SNP	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312987	NES15818146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46385085 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	905 bp upstream
Cpgi11001	CpG island 11001	744 bp distal
Cpgi11002	CpG island 11002	44 bp proximal
Gm59146	predicted gene, 59146	489 bp downstream
Rr405999	regulatory region 405999	1306 bp downstream
Rr406000	regulatory region 406000	662 bp downstream
Rr406001	regulatory region 406001	within coordinates
Rr548727	regulatory region 548727	1543 bp distal
Rr548728	regulatory region 548728	919 bp distal
Rr548729	regulatory region 548729	409 bp distal
Rr548730	regulatory region 548730	within coordinates
Rr548731	regulatory region 548731	95 bp proximal
Rr548732	regulatory region 548732	203 bp proximal
Rr548733	regulatory region 548733	915 bp proximal
Rr548734	regulatory region 548734	957 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	250 bp upstream
Tssr156751	transcription start site region 156751	1281 bp downstream
Tssr156752	transcription start site region 156752	1253 bp downstream
Tssr156753	transcription start site region 156753	239 bp upstream
Tssr156754	transcription start site region 156754	363 bp upstream
Tssr159650	transcription start site region 159650	890 bp upstream