rs50462191 SNP Detail

Summary

• ID
  rs50462191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71734246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA TAGGCAGCTT CTTCTTCCAG
  Y
  GCTTCCCCCT CCCGAGCCCT CCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133277093	ENSMUSSNP1581970	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321818270	CHEV_6_71707256	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50462191					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71734246 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	20 bp upstream
Rr368099	regulatory region 368099	400 bp upstream
Rr631995	regulatory region 631995	within coordinates
Rr631996	regulatory region 631996	126 bp distal
Rr631997	regulatory region 631997	1570 bp proximal