rs50462303 SNP Detail

Summary

• ID
  rs50462303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACAAAA TTGTCCACAC
  GGTTGACTCG GAGCTGGTAA GTGGTATTGA CGGGTGACAG GGTAGACACG TCCACATAGA
  AAAACTGGAT CTCAGACTCA TTCTTGGTGG GGGGCTGACA CAGAGTTCGT TCCACTTTTT
  GGTAGAGGTA CTTCCGCTGA TATCTATGGT CCAAGACAGA GAAGAGTGTG ACTAGTCCCA
  R
  CCAGCCTGAG TTCTTCCTAT CAGGTCCCCA TATTTCCCAT TCCCTGGGCT GACAAAGTTA
  CCCTCCTGCC ACTGGGCTCA GGGAGAAGGG AGAAAAACAA AAAGGTTCCC CGGGTGAGGG
  TCCCTGAAAA CCTGGCAAGG ATGCCCCTCC CTACATCCCC AGGTCTTACT CACAGTCCTC
  GAAGGATTAG GGGCACCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136420885	ENSMUSSNP760134	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50462303					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864249 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1150 bp upstream
Cpgi21698	CpG island 21698	1482 bp proximal
Gm68914	predicted gene, 68914	1699 bp downstream
Rr678012	regulatory region 678012	660 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	67 bp upstream
Tssr89293	transcription start site region 89293	722 bp downstream